Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041964.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 419767 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 4792 | 1.1415856892037726 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4776 | 1.1377740508424912 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2248 | 0.5355351897600336 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 2200 | 0.5241002746761895 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 637 | 0.15175085225851484 | No Hit |
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 551 | 0.13126329606662743 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 501 | 0.11935192618762314 | No Hit |
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 488 | 0.11625497001908201 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAACGCT | 25 | 0.005492418 | 29.6 | 4 |
CCGCCTA | 25 | 0.005492418 | 29.6 | 15 |
GTTATGC | 25 | 0.005492418 | 29.6 | 3 |
CGTAGCT | 45 | 4.0002906E-6 | 28.777779 | 25 |
GCGTAGC | 45 | 4.0002906E-6 | 28.777779 | 24 |
CGCCTAT | 35 | 8.859978E-4 | 26.428572 | 34 |
ACGCTCC | 35 | 8.859978E-4 | 26.428572 | 6 |
TTGCGTA | 50 | 9.073146E-6 | 25.900002 | 22 |
TACTGAG | 40 | 0.0019291565 | 23.125 | 2 |
TCTAGTG | 50 | 2.698144E-4 | 22.2 | 28 |
CTACCCG | 50 | 2.698144E-4 | 22.2 | 10 |
CGATGTC | 50 | 2.698144E-4 | 22.2 | 23 |
TATACTG | 50 | 2.698144E-4 | 22.2 | 5 |
GTACGAT | 50 | 2.698144E-4 | 22.2 | 20 |
TATTAAC | 60 | 3.7190373E-5 | 21.583332 | 2 |
GTATACT | 60 | 3.7190373E-5 | 21.583332 | 4 |
ACGGACC | 105 | 9.767973E-10 | 21.142857 | 8 |
GGCGTTA | 45 | 0.0038218228 | 20.555557 | 31 |
GACCAGA | 90 | 9.442374E-8 | 20.555557 | 11 |
CGTGTCG | 45 | 0.0038218228 | 20.555557 | 9 |