Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041962.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10327013 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 40994 | 0.3969589270392126 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 34223 | 0.3313930175162944 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 31043 | 0.3005999895613572 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 18109 | 0.1753556425270308 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATAACG | 595 | 0.0 | 19.27731 | 2 |
GTATAAC | 1070 | 0.0 | 16.252337 | 1 |
AAGACGG | 2680 | 0.0 | 15.255597 | 5 |
TAACGCA | 825 | 0.0 | 15.248486 | 4 |
GACGGAC | 2630 | 0.0 | 15.053233 | 7 |
ACGGACC | 2700 | 0.0 | 14.731482 | 8 |
TCTAGCG | 1910 | 0.0 | 14.141362 | 28 |
CGCAAGA | 3030 | 0.0 | 14.103961 | 2 |
CTAGCGG | 1920 | 0.0 | 14.067709 | 29 |
TCTATAC | 1500 | 0.0 | 14.059999 | 3 |
TAACGGC | 730 | 0.0 | 13.938356 | 36 |
AGACGGA | 2905 | 0.0 | 13.628226 | 6 |
TTAACGG | 750 | 0.0 | 13.566666 | 35 |
TAAACGC | 2630 | 0.0 | 13.505705 | 28 |
ATAACGC | 2480 | 0.0 | 13.502015 | 3 |
TAATACT | 3410 | 0.0 | 13.454546 | 4 |
AATACTG | 2850 | 0.0 | 13.371929 | 5 |
CGGACCA | 3010 | 0.0 | 13.33721 | 9 |
TCGCTAA | 430 | 0.0 | 13.337209 | 14 |
TACCGTC | 1915 | 0.0 | 13.331593 | 7 |