FastQCFastQC Report
Thu 28 Apr 2016
ERR1041962.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041962.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10327013
Sequences flagged as poor quality0
Sequence length43
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT409940.3969589270392126No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT342230.3313930175162944No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT310430.3005999895613572No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT181090.1753556425270308No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATAACG5950.019.277312
GTATAAC10700.016.2523371
AAGACGG26800.015.2555975
TAACGCA8250.015.2484864
GACGGAC26300.015.0532337
ACGGACC27000.014.7314828
TCTAGCG19100.014.14136228
CGCAAGA30300.014.1039612
CTAGCGG19200.014.06770929
TCTATAC15000.014.0599993
TAACGGC7300.013.93835636
AGACGGA29050.013.6282266
TTAACGG7500.013.56666635
TAAACGC26300.013.50570528
ATAACGC24800.013.5020153
TAATACT34100.013.4545464
AATACTG28500.013.3719295
CGGACCA30100.013.337219
TCGCTAA4300.013.33720914
TACCGTC19150.013.3315937