Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041949.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7892947 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 60032 | 0.7605777664540254 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 48619 | 0.6159803176177415 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 38488 | 0.48762521780521273 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG | 37692 | 0.4775402647452213 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 37188 | 0.47115481707909607 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA | 23598 | 0.2989757817960769 | No Hit |
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 21516 | 0.27259780155625013 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19792 | 0.2507555162856155 | No Hit |
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT | 12482 | 0.15814118604875974 | No Hit |
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG | 12013 | 0.15219917224833765 | No Hit |
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG | 11712 | 0.14838564100329066 | No Hit |
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC | 10878 | 0.13781924546053584 | No Hit |
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC | 9306 | 0.11790273012095483 | No Hit |
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT | 8815 | 0.11168198646209077 | No Hit |
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA | 8139 | 0.10311737808451013 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 660 | 0.0 | 16.53788 | 5 |
GTATTAG | 2510 | 0.0 | 15.551792 | 1 |
TTTAGCG | 595 | 0.0 | 15.546219 | 26 |
GACGGAC | 1410 | 0.0 | 15.482269 | 7 |
ACGGACC | 1430 | 0.0 | 15.395105 | 8 |
AAGACGG | 1510 | 0.0 | 15.31457 | 5 |
CGTATTA | 610 | 0.0 | 15.163935 | 15 |
TCTATAC | 1030 | 0.0 | 14.907767 | 3 |
TCGCTAA | 360 | 0.0 | 14.902779 | 14 |
TTAGCGA | 460 | 0.0 | 14.880434 | 27 |
TAATACT | 2420 | 0.0 | 14.830578 | 4 |
TTAACGG | 880 | 0.0 | 14.715909 | 35 |
TCTAGCG | 975 | 0.0 | 14.610256 | 28 |
TAACGGC | 900 | 0.0 | 14.594444 | 36 |
TAACGCC | 1450 | 0.0 | 14.5448265 | 4 |
TCGTTTA | 1270 | 0.0 | 14.42126 | 30 |
TTAGACT | 765 | 0.0 | 14.267974 | 4 |
ATTAGAC | 695 | 0.0 | 14.107914 | 3 |
TAAACGC | 1370 | 0.0 | 13.908759 | 28 |
CGCATCG | 1375 | 0.0 | 13.858181 | 13 |