Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041942.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5617278 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 52 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 7106 | 0.12650255159171397 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG | 7022 | 0.12500716539220597 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 6789 | 0.1208592489102373 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 6270 | 0.11161989846327706 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGTTTA | 805 | 0.0 | 16.31677 | 30 |
ACGGACC | 1355 | 0.0 | 15.974169 | 8 |
TCTAGCG | 1005 | 0.0 | 15.830845 | 28 |
AAGACGG | 1550 | 0.0 | 15.396773 | 5 |
GTTCAAA | 2030 | 0.0 | 15.310345 | 1 |
GACGGAC | 1440 | 0.0 | 15.159721 | 7 |
TTAACGG | 440 | 0.0 | 15.136364 | 35 |
ATTAGAG | 990 | 0.0 | 14.949495 | 3 |
CTAGCGG | 1110 | 0.0 | 14.333333 | 29 |
CTAGTAC | 260 | 0.0 | 14.230769 | 3 |
CGCAAGA | 1640 | 0.0 | 14.213415 | 2 |
AGACGGA | 1590 | 0.0 | 14.194969 | 6 |
TAATACT | 920 | 0.0 | 14.076087 | 4 |
TAACGGC | 460 | 0.0 | 14.076087 | 36 |
TTAGAGT | 745 | 0.0 | 13.90604 | 4 |
TATTAGA | 800 | 0.0 | 13.875001 | 2 |
CAAGACG | 1750 | 0.0 | 13.742857 | 4 |
CGTTTAT | 980 | 0.0 | 13.591838 | 31 |
ATACCGC | 1730 | 0.0 | 13.580924 | 27 |
CGGACCA | 1685 | 0.0 | 13.504451 | 9 |