FastQCFastQC Report
Thu 28 Apr 2016
ERR1041934.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041934.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3093881
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA15150.019.1716181
GTATACG1103.8578946E-818.51
ACGGACC6800.018.227948
GACGGAC7350.016.8639457
CAAATCG5650.016.69911613
AAGACGG8050.016.0869565
ATAATAC4200.015.8571443
CGCAAGA8350.015.7305382
TACGGGT1455.354741E-815.3103464
AAATCGC6100.014.86065614
AGACGGA8500.014.86
TATTAGA3150.014.6825392
GTATTAG9400.014.563831
AATCGCT6750.014.52592615
TAATACT4350.014.459774
CAAGACG9450.014.2910054
AACTAAG6350.014.27559127
TAATACG1956.7484507E-1014.230774
CGTTATT5600.014.2053572
AATTAAC6650.014.1879692
Produced by FastQC (version 0.11.5)