FastQCFastQC Report
Thu 28 Apr 2016
ERR1041933.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041933.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2532135
Sequences flagged as poor quality0
Sequence length43
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTAACGG3450.019.30434635
TTAGCGA1002.8783143E-718.527
CGTTATT3800.018.0131592
TTAGAGT3300.017.9393964
TATTATA4100.016.6951222
GTATTAG9900.016.4444451
AATACGC2500.016.2799995
TAACGGC4150.016.04819336
TACCGTC3000.016.0333337
GTATTAT3850.015.8571421
TTAGTAC1059.351901E-615.8571423
ATTAGAG6500.015.6538473
TATTAGA6050.015.5950412
TTAGACT2750.015.4727284
ATAACGA4200.015.41666612
TATCCCG2300.015.2826095
TAACGAA4250.015.23529413
ATACGCC2550.015.2352946
CGCAAGA5100.015.2352942
GTTTAAC4400.015.13636433
Produced by FastQC (version 0.11.5)