FastQCFastQC Report
Thu 28 Apr 2016
ERR1041930.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041930.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2319754
Sequences flagged as poor quality0
Sequence length43
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT64350.2774001036316782No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT59720.2574410907363453No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT39480.17019045985048414No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT23280.1003554687264253No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGCTAA951.677945E-719.47368414
TAACGCC3200.019.0781254
GAATAAC3400.019.0441171
TTAACGG1306.9849193E-1018.535
AATAACG2950.018.1864412
TAGGTCG1156.413211E-817.69565221
TATACTG3000.017.2666665
TCGTTTA3100.016.70967930
ACGGACC3750.016.288
TAATACT4800.016.18754
GTATTAG6100.015.7704931
TCTAGCG2950.015.67796728
CTAGCGG3000.015.41666729
ATCGTTT3750.015.29333429
GTATATA2300.015.2826091
ATAACGC3900.015.1794873
AACGCCG3600.014.9027785
AGTACCG1252.9617058E-614.7999995
CGCATCG3650.014.6986313
GTAAACG2900.014.67241427