Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041930.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2319754 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 50 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6435 | 0.2774001036316782 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 5972 | 0.2574410907363453 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 3948 | 0.17019045985048414 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2328 | 0.1003554687264253 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGCTAA | 95 | 1.677945E-7 | 19.473684 | 14 |
TAACGCC | 320 | 0.0 | 19.078125 | 4 |
GAATAAC | 340 | 0.0 | 19.044117 | 1 |
TTAACGG | 130 | 6.9849193E-10 | 18.5 | 35 |
AATAACG | 295 | 0.0 | 18.186441 | 2 |
TAGGTCG | 115 | 6.413211E-8 | 17.695652 | 21 |
TATACTG | 300 | 0.0 | 17.266666 | 5 |
TCGTTTA | 310 | 0.0 | 16.709679 | 30 |
ACGGACC | 375 | 0.0 | 16.28 | 8 |
TAATACT | 480 | 0.0 | 16.1875 | 4 |
GTATTAG | 610 | 0.0 | 15.770493 | 1 |
TCTAGCG | 295 | 0.0 | 15.677967 | 28 |
CTAGCGG | 300 | 0.0 | 15.416667 | 29 |
ATCGTTT | 375 | 0.0 | 15.293334 | 29 |
GTATATA | 230 | 0.0 | 15.282609 | 1 |
ATAACGC | 390 | 0.0 | 15.179487 | 3 |
AACGCCG | 360 | 0.0 | 14.902778 | 5 |
AGTACCG | 125 | 2.9617058E-6 | 14.799999 | 5 |
CGCATCG | 365 | 0.0 | 14.69863 | 13 |
GTAAACG | 290 | 0.0 | 14.672414 | 27 |