Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041927.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5871040 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 50 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13158 | 0.2241170218564343 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 11817 | 0.2012760941843353 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 8356 | 0.14232572082629313 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTAAT | 140 | 3.481E-8 | 15.857143 | 1 |
GACGGAC | 1130 | 0.0 | 15.38938 | 7 |
TATACTG | 885 | 0.0 | 15.259887 | 5 |
AAGACGG | 1250 | 0.0 | 15.096 | 5 |
ACGGACC | 1210 | 0.0 | 14.983471 | 8 |
GTATACG | 245 | 0.0 | 14.346938 | 1 |
GTATTAG | 1435 | 0.0 | 14.181186 | 1 |
TCTAGCG | 690 | 0.0 | 13.942028 | 28 |
CGAACGA | 520 | 0.0 | 13.875 | 16 |
CAAGACG | 1460 | 0.0 | 13.811644 | 4 |
CGGACCA | 1355 | 0.0 | 13.516605 | 9 |
TACGACG | 935 | 0.0 | 13.454545 | 5 |
TAATACG | 295 | 0.0 | 13.169492 | 4 |
GGTATCA | 8080 | 0.0 | 13.165223 | 1 |
CGCAAGA | 1510 | 0.0 | 12.986755 | 2 |
CGACGGT | 930 | 0.0 | 12.731182 | 7 |
CTAGCGG | 800 | 0.0 | 12.718751 | 29 |
TCTATAC | 715 | 0.0 | 12.678321 | 3 |
TAACGCC | 765 | 0.0 | 12.575163 | 4 |
TACGGGT | 310 | 0.0 | 12.532258 | 4 |