Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041923.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3698210 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 5941 | 0.16064528515146517 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5273 | 0.14258249261129033 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG | 5149 | 0.1392295191457489 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 4622 | 0.12497938191719778 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA | 3774 | 0.10204936983026923 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGACGG | 885 | 0.0 | 18.60452 | 5 |
ACGGACC | 810 | 0.0 | 18.04321 | 8 |
GACGGAC | 820 | 0.0 | 17.82317 | 7 |
TCTAGCG | 615 | 0.0 | 17.447155 | 28 |
CGCAAGA | 925 | 0.0 | 17.0 | 2 |
ATTAGAG | 770 | 0.0 | 16.337664 | 3 |
TTAGACT | 240 | 0.0 | 16.1875 | 4 |
CTAGCGG | 665 | 0.0 | 16.135338 | 29 |
CGGACCA | 935 | 0.0 | 16.02674 | 9 |
TTAACGG | 315 | 0.0 | 15.857143 | 35 |
GTATACG | 140 | 3.4797267E-8 | 15.857143 | 1 |
TAGACTA | 305 | 0.0 | 15.770493 | 5 |
AGACGGA | 975 | 0.0 | 15.748719 | 6 |
TCGTTTA | 590 | 0.0 | 15.677966 | 30 |
GCGAAAG | 1015 | 0.0 | 14.945811 | 18 |
TAACGGC | 335 | 0.0 | 14.910448 | 36 |
TATACTG | 410 | 0.0 | 14.890244 | 5 |
TAGAGTG | 475 | 0.0 | 14.8 | 5 |
TTTAGCG | 240 | 0.0 | 14.645833 | 26 |
GCGCAAG | 1125 | 0.0 | 14.635555 | 1 |