FastQCFastQC Report
Thu 28 Apr 2016
ERR1041923.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041923.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3698210
Sequences flagged as poor quality0
Sequence length43
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC59410.16064528515146517No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT52730.14258249261129033No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG51490.1392295191457489No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT46220.12497938191719778No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA37740.10204936983026923No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGACGG8850.018.604525
ACGGACC8100.018.043218
GACGGAC8200.017.823177
TCTAGCG6150.017.44715528
CGCAAGA9250.017.02
ATTAGAG7700.016.3376643
TTAGACT2400.016.18754
CTAGCGG6650.016.13533829
CGGACCA9350.016.026749
TTAACGG3150.015.85714335
GTATACG1403.4797267E-815.8571431
TAGACTA3050.015.7704935
AGACGGA9750.015.7487196
TCGTTTA5900.015.67796630
GCGAAAG10150.014.94581118
TAACGGC3350.014.91044836
TATACTG4100.014.8902445
TAGAGTG4750.014.85
TTTAGCG2400.014.64583326
GCGCAAG11250.014.6355551