Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041919.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8816793 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 82877 | 0.9399903116700142 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 69368 | 0.7867713351101698 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 46108 | 0.5229565897713602 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 30699 | 0.348187827478767 | No Hit |
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG | 21286 | 0.24142565216173276 | No Hit |
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG | 14091 | 0.15982001618956007 | No Hit |
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG | 12703 | 0.1440773306121625 | No Hit |
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT | 10033 | 0.11379421066140488 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTACGCT | 935 | 0.0 | 18.005346 | 30 |
CGCTATC | 1010 | 0.0 | 16.668318 | 33 |
GACGCTA | 1070 | 0.0 | 16.598131 | 26 |
CGAGACG | 1205 | 0.0 | 16.273859 | 23 |
ACGCTAC | 1105 | 0.0 | 15.737556 | 27 |
ATCTCGT | 1060 | 0.0 | 15.707547 | 37 |
GCTACGC | 1110 | 0.0 | 15.666667 | 29 |
CCCACGA | 1625 | 0.0 | 14.913846 | 19 |
CGCTACG | 1140 | 0.0 | 14.605263 | 28 |
ATCTCCG | 1830 | 0.0 | 14.456284 | 10 |
TATACAC | 2205 | 0.0 | 14.43084 | 3 |
CGAGCCC | 1830 | 0.0 | 14.35519 | 15 |
TCTCCGA | 1885 | 0.0 | 14.328913 | 11 |
CACGAGA | 1625 | 0.0 | 13.889231 | 21 |
TCCGAGC | 1955 | 0.0 | 13.626599 | 13 |
TATCTCG | 1250 | 0.0 | 13.32 | 36 |
ACGAGAC | 1555 | 0.0 | 13.086818 | 22 |
GCCCACG | 1925 | 0.0 | 12.974025 | 18 |
TACACAT | 2580 | 0.0 | 12.835272 | 5 |
CTAGTAC | 635 | 0.0 | 12.527559 | 3 |