Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041917.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 11743301 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 82401 | 0.7016851564990116 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 65705 | 0.5595104817631771 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 41282 | 0.35153659094661716 | No Hit |
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG | 36695 | 0.31247602356441345 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 31690 | 0.26985598001788424 | No Hit |
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG | 22753 | 0.19375301714569013 | No Hit |
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG | 21970 | 0.18708538595749183 | No Hit |
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT | 15722 | 0.13388058434336308 | No Hit |
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT | 14109 | 0.12014509378581031 | No Hit |
GGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAG | 13996 | 0.11918284305239217 | No Hit |
TATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAGTA | 12796 | 0.10896425119308448 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACAC | 2300 | 0.0 | 15.121739 | 3 |
ATCTCGT | 1945 | 0.0 | 14.74293 | 37 |
CGAGACA | 1945 | 0.0 | 14.647815 | 23 |
AATCTCG | 2110 | 0.0 | 13.85308 | 36 |
ACGAGAC | 2145 | 0.0 | 13.3682995 | 22 |
CCCACGA | 2265 | 0.0 | 13.068433 | 19 |
GTACTAG | 715 | 0.0 | 12.678322 | 1 |
ATCTCCG | 2375 | 0.0 | 12.618948 | 10 |
TTAACGG | 1710 | 0.0 | 12.441521 | 35 |
GGGGTTA | 2145 | 0.0 | 12.333334 | 6 |
TCTCCGA | 2400 | 0.0 | 12.333333 | 11 |
ATACACA | 3505 | 0.0 | 12.298145 | 4 |
GGGTTAG | 2090 | 0.0 | 12.038279 | 7 |
TAGGGGT | 2110 | 0.0 | 12.0118475 | 4 |
TACACAT | 3035 | 0.0 | 11.947282 | 5 |
GGCAATC | 2525 | 0.0 | 11.649506 | 33 |
ATTAGAC | 720 | 0.0 | 11.5625 | 3 |
GCCCACG | 2615 | 0.0 | 11.5315485 | 18 |
TAACGGC | 1815 | 0.0 | 11.517906 | 36 |
TAATACT | 3475 | 0.0 | 11.499281 | 4 |