FastQCFastQC Report
Thu 28 Apr 2016
ERR1041917.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041917.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11743301
Sequences flagged as poor quality0
Sequence length43
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT824010.7016851564990116No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT657050.5595104817631771No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT412820.35153659094661716No Hit
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG366950.31247602356441345No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT316900.26985598001788424No Hit
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG227530.19375301714569013No Hit
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG219700.18708538595749183No Hit
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT157220.13388058434336308No Hit
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT141090.12014509378581031No Hit
GGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAG139960.11918284305239217No Hit
TATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAGTA127960.10896425119308448No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATACAC23000.015.1217393
ATCTCGT19450.014.7429337
CGAGACA19450.014.64781523
AATCTCG21100.013.8530836
ACGAGAC21450.013.368299522
CCCACGA22650.013.06843319
GTACTAG7150.012.6783221
ATCTCCG23750.012.61894810
TTAACGG17100.012.44152135
GGGGTTA21450.012.3333346
TCTCCGA24000.012.33333311
ATACACA35050.012.2981454
GGGTTAG20900.012.0382797
TAGGGGT21100.012.01184754
TACACAT30350.011.9472825
GGCAATC25250.011.64950633
ATTAGAC7200.011.56253
GCCCACG26150.011.531548518
TAACGGC18150.011.51790636
TAATACT34750.011.4992814