FastQCFastQC Report
Thu 28 Apr 2016
ERR1041912.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041912.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7448739
Sequences flagged as poor quality0
Sequence length43
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT962961.292782577024111No Hit
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG573880.7704391307038682No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT569780.7649348433338852No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT372520.5001114953819701No Hit
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG351990.472549783258616No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT328340.4407994426976164No Hit
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG327730.439980512137692No Hit
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT263510.35376457679615303No Hit
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT217910.2925461611690247No Hit
GGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAG208560.27999370094723414No Hit
TATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAGTA191800.25749324818603525No Hit
AAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAA152400.204598389069613No Hit
GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG151780.20376603341854238No Hit
ACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGA140700.1888910324284419No Hit
CTTCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGT137170.18415197525379798No Hit
TCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGTTG126830.1702704310085237No Hit
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA126520.16985425318298844No Hit
GTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAGT122490.1644439414510295No Hit
GTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAG121860.16359816070881258No Hit
ACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTTGATAC120270.1614635712165509No Hit
CAGTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGC118880.15959748354721517No Hit
CTCTAATACTGGTGATGCTAGAGGTGATGTTTTTGGTAAACAG110540.14840095753120092No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT110420.14823985643744533No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCC109810.14742092587752104No Hit
GCGTTGATACCACTGCTTCCCGTACTCTGCGTTGATACCACTG105260.14131250940595447No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT104990.14095003194500438No Hit
GCTTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTG97280.13059928667120704No Hit
TGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTG87280.11717419552490697No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCC85990.11544235876703426No Hit
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTC82100.11021999831112353No Hit
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCG78790.1057762931416982No Hit
GTACGGGAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAA78620.10554806659221112No Hit
CCACTGCTTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTA77740.1043666585713367No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTT76210.1023126196259528No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTACGCT8850.026.54802530
ATCTCGT10100.024.91088937
CCCACGA14450.024.32525819
ACGAGAC13000.023.76538522
CGCTACG9950.023.61306628
CGAGCCC16100.023.555915
CGAGACG13200.022.84469623
ACGCTAT11200.022.1339332
GCCCACG16400.021.88414618
ATCTCCG17750.021.57464810
TCTCCGA17750.021.57464811
TATACAC18700.021.4679133
TACGCTA10950.021.45662131
GAGACGC14900.019.86577224
GCTACGC12800.019.51171929
TACACAT22950.018.9433545
GACGCTA13300.018.91729226
ACGCTAC13850.018.43321227
CGCTATC13650.018.43223433
ATACACA24750.017.7151534