FastQCFastQC Report
Thu 28 Apr 2016
ERR1041909.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041909.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13420222
Sequences flagged as poor quality0
Sequence length43
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT1105780.8239655051905997No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT894440.6664867391910506No Hit
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG707140.526921238709762No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT571000.42547731326650184No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT500360.3728403300630943No Hit
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG445180.3317232755166047No Hit
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG426070.3174835706890691No Hit
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT326080.24297660649726954No Hit
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT288540.21500389486850516No Hit
GGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAG260820.194348498854937No Hit
TATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAGTA224500.16728486309689958No Hit
GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG211260.15741915446704235No Hit
AAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAA199610.14873822504575557No Hit
CTTCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGT184260.1373002622460344No Hit
ACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGA182210.13577271672555044No Hit
GTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAG165590.12338842084728553No Hit
CAGTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGC163610.12191303541774494No Hit
TCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGTTG162350.12097415378076457No Hit
GTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAGT160880.11987879187095414No Hit
GCGTTGATACCACTGCTTCCCGTACTCTGCGTTGATACCACTG158370.11800848003855674No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT153710.11453610827004201No Hit
ACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTTGATAC151950.11322465455489485No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTACGCT11600.016.58620830
TTAACGG15350.015.18566735
CGAGACG15200.015.09210623
GACGCTA14500.014.16206926
CCCACGA21800.014.00229419
TATACAC25800.013.9825583
TAACGGC17650.013.31161636
ACGCTAC15450.013.29126227
TCTCCGA23400.013.28205211
ATCTCGT14800.013.2537
GCTACGC15650.013.23961629
ATCTCCG22950.013.22004410
CGCTACG14650.013.13310528
CGAGCCC23850.013.03144715
TACGCTA14500.013.01379331
ACGCTAT14850.012.95622932
GTATTAG38350.012.8318121
TAATACT35350.012.7694484
TCTAATA31050.012.7504032
ACGAGAC18900.012.529122