FastQCFastQC Report
Thu 28 Apr 2016
ERR1041907.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041907.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10358077
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT402160.3882573956536527No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT319050.30802049453774094No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT255010.24619434669195836No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT128440.12399985055141027No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA88750.028.121
GTATCAA141100.017.673992
ATCAACG207100.012.1933854
TTAACGG9350.012.06951935
TCAACGC209350.012.0181515
TCTATAC13550.012.014763
TATCAAC215300.011.8406873
CAACGCA212050.011.8389536
AACGCAG222550.011.3302637
TATACTG17000.011.0999995
TAACGGC10350.011.08212636
GTATTAG29050.010.6351121
TAGACTG10650.010.4225355
CGTAGAC9900.010.2777783
TAATACT27400.010.26277354
CCTGTAA77050.010.2284221
CTAGTAC5250.010.2190483
CTACACT18300.010.2103834
TGTAATC79000.010.1867083
TAATCCC75050.010.0572965