Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041907.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10358077 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 40216 | 0.3882573956536527 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 31905 | 0.30802049453774094 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 25501 | 0.24619434669195836 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12844 | 0.12399985055141027 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8875 | 0.0 | 28.12 | 1 |
GTATCAA | 14110 | 0.0 | 17.67399 | 2 |
ATCAACG | 20710 | 0.0 | 12.193385 | 4 |
TTAACGG | 935 | 0.0 | 12.069519 | 35 |
TCAACGC | 20935 | 0.0 | 12.018151 | 5 |
TCTATAC | 1355 | 0.0 | 12.01476 | 3 |
TATCAAC | 21530 | 0.0 | 11.840687 | 3 |
CAACGCA | 21205 | 0.0 | 11.838953 | 6 |
AACGCAG | 22255 | 0.0 | 11.330263 | 7 |
TATACTG | 1700 | 0.0 | 11.099999 | 5 |
TAACGGC | 1035 | 0.0 | 11.082126 | 36 |
GTATTAG | 2905 | 0.0 | 10.635112 | 1 |
TAGACTG | 1065 | 0.0 | 10.422535 | 5 |
CGTAGAC | 990 | 0.0 | 10.277778 | 3 |
TAATACT | 2740 | 0.0 | 10.2627735 | 4 |
CCTGTAA | 7705 | 0.0 | 10.228422 | 1 |
CTAGTAC | 525 | 0.0 | 10.219048 | 3 |
CTACACT | 1830 | 0.0 | 10.210383 | 4 |
TGTAATC | 7900 | 0.0 | 10.186708 | 3 |
TAATCCC | 7505 | 0.0 | 10.057296 | 5 |