FastQCFastQC Report
Thu 28 Apr 2016
ERR1041905.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041905.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4589860
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT64720.14100647950046405No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT63180.1376512573368251No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTAACGG9950.014.87437235
TCGCTAA1508.117786E-814.814
TATACTG3750.014.3066675
GGTATCA115550.013.9130251
TATTAGA13700.013.9087592
GTACTAT4950.013.8282831
TCTAGCG2304.0017767E-1113.67391328
TCTTATA30950.013.62843237
ATTAGAG14150.013.3356893
TAACGGC11350.013.20264336
TAAACCG1000.001833932912.9500015
CTTATAC23900.012.84937237
ATGTACG3050.012.73770511
ACCGTCC3500.012.6857158
CGAACTA9700.012.39690724
ATCTCGT9150.012.33333337
CTATACG1653.8099606E-612.3333334
GACACAT13900.012.24460426
GTTTAAC13600.012.24264733
TACTCCG13450.012.2416355