Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041900.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4828330 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 8332 | 0.17256484125981447 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8247 | 0.17080439820807608 | No Hit |
CTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGT | 5958 | 0.12339670237949767 | No Hit |
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG | 5925 | 0.12271323625352865 | No Hit |
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT | 5902 | 0.12223688107482297 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 5591 | 0.11579573061493312 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTACTAG | 1535 | 0.0 | 16.5114 | 30 |
ACTAGAT | 1730 | 0.0 | 15.291907 | 32 |
TATACAC | 1655 | 0.0 | 15.202417 | 3 |
TACACAT | 1765 | 0.0 | 15.093484 | 5 |
ATCTCGT | 1705 | 0.0 | 14.973607 | 37 |
CTAGATC | 1730 | 0.0 | 14.971098 | 33 |
ATACACA | 1970 | 0.0 | 14.8375635 | 4 |
TATTAGA | 1670 | 0.0 | 14.733533 | 2 |
ATCTCCG | 1840 | 0.0 | 14.679348 | 10 |
GTATAAC | 270 | 0.0 | 14.388889 | 1 |
ATACCGT | 220 | 1.8189894E-11 | 14.295454 | 6 |
GACCGTA | 1765 | 0.0 | 14.254957 | 26 |
TCGCTAA | 275 | 0.0 | 14.127274 | 14 |
TATATCG | 305 | 0.0 | 13.95082 | 5 |
ACATCTC | 2045 | 0.0 | 13.9315405 | 8 |
TAGATCT | 1880 | 0.0 | 13.776596 | 34 |
TCTCCGA | 1930 | 0.0 | 13.6114 | 11 |
TACTAGA | 1935 | 0.0 | 13.576227 | 31 |
AGACTAT | 425 | 0.0 | 13.494118 | 6 |
ATTAGAG | 1605 | 0.0 | 13.48598 | 3 |