Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041895.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1204070 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5981 | 0.4967319175795427 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 5635 | 0.46799604674146855 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 4127 | 0.3427541588113648 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2030 | 0.1685948491366781 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTAGCGG | 50 | 2.702205E-4 | 22.2 | 29 |
TTAGACT | 75 | 9.266376E-6 | 19.733332 | 4 |
TAACGGC | 255 | 0.0 | 18.137255 | 36 |
TTAACGG | 255 | 0.0 | 18.137255 | 35 |
ATACCGT | 95 | 3.606674E-6 | 17.526316 | 6 |
ACCGTCG | 65 | 0.0015799928 | 17.076923 | 8 |
ATTGTAC | 100 | 5.8782553E-6 | 16.650002 | 3 |
CGTATTG | 90 | 4.4462373E-5 | 16.444445 | 27 |
CATACTG | 105 | 9.343754E-6 | 15.857144 | 5 |
GTTAGAT | 95 | 7.0601185E-5 | 15.578948 | 27 |
TCTAGAT | 280 | 0.0 | 15.196428 | 2 |
GGTATCA | 2925 | 0.0 | 15.179487 | 1 |
TATCGCC | 195 | 4.1836756E-11 | 15.179487 | 33 |
TCTATCG | 195 | 4.1836756E-11 | 15.179487 | 31 |
ATTAGAG | 355 | 0.0 | 15.112677 | 3 |
TTAGAGT | 100 | 1.093432E-4 | 14.8 | 4 |
TAGCACC | 100 | 1.093432E-4 | 14.8 | 4 |
TCTAGCG | 75 | 0.004104558 | 14.799999 | 28 |
CGCTAGA | 75 | 0.004104558 | 14.799999 | 37 |
GTACTAT | 240 | 0.0 | 14.645834 | 1 |