FastQCFastQC Report
Thu 28 Apr 2016
ERR1041892.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041892.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3180722
Sequences flagged as poor quality0
Sequence length43
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT63870.2008034653767289No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT55880.17568338257791785No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT38880.1222363978995964No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA28650.031.8987791
GTATCAA41000.022.1999992
CTAGTAC1950.019.9230773
GTATACG902.1546512E-618.51
TTAACGG2250.017.26666635
TCTACGC1403.479181E-815.8571423
TCGCTAA1201.9380204E-615.41666714
CGCTATA4000.015.2625012
TATCAAC61550.014.9983753
GTTTAGG3950.014.9873421
GTGTTAG6050.014.9834711
TAGAACG750.004106526314.84
ATCAACG62000.014.7403224
TCAACGC62700.014.5757585
CAACGCA63300.014.4668256
TTAGACA2201.8189894E-1114.2954544
GTATTAT1854.9076334E-914.01
TACACTG5550.014.05
GTATTAA2800.013.8751
TATATCG800.006301849613.8755