Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041892.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3180722 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 55 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 6387 | 0.2008034653767289 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5588 | 0.17568338257791785 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 3888 | 0.1222363978995964 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2865 | 0.0 | 31.898779 | 1 |
GTATCAA | 4100 | 0.0 | 22.199999 | 2 |
CTAGTAC | 195 | 0.0 | 19.923077 | 3 |
GTATACG | 90 | 2.1546512E-6 | 18.5 | 1 |
TTAACGG | 225 | 0.0 | 17.266666 | 35 |
TCTACGC | 140 | 3.479181E-8 | 15.857142 | 3 |
TCGCTAA | 120 | 1.9380204E-6 | 15.416667 | 14 |
CGCTATA | 400 | 0.0 | 15.262501 | 2 |
TATCAAC | 6155 | 0.0 | 14.998375 | 3 |
GTTTAGG | 395 | 0.0 | 14.987342 | 1 |
GTGTTAG | 605 | 0.0 | 14.983471 | 1 |
TAGAACG | 75 | 0.0041065263 | 14.8 | 4 |
ATCAACG | 6200 | 0.0 | 14.740322 | 4 |
TCAACGC | 6270 | 0.0 | 14.575758 | 5 |
CAACGCA | 6330 | 0.0 | 14.466825 | 6 |
TTAGACA | 220 | 1.8189894E-11 | 14.295454 | 4 |
GTATTAT | 185 | 4.9076334E-9 | 14.0 | 1 |
TACACTG | 555 | 0.0 | 14.0 | 5 |
GTATTAA | 280 | 0.0 | 13.875 | 1 |
TATATCG | 80 | 0.0063018496 | 13.875 | 5 |