Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041891.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2215586 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 54 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 3362 | 0.15174315057054882 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3060 | 0.1381124451950861 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2135 | 0.0 | 31.800936 | 1 |
TAAGTCG | 45 | 1.3237534E-4 | 24.666668 | 5 |
GTATCAA | 2910 | 0.0 | 23.204466 | 2 |
CTAGTAC | 155 | 0.0 | 22.677418 | 3 |
TAACGGC | 200 | 0.0 | 22.2 | 36 |
TTAACGG | 195 | 0.0 | 21.82051 | 35 |
TTTAACG | 215 | 0.0 | 19.790697 | 34 |
TCTATAC | 145 | 7.2759576E-12 | 19.13793 | 3 |
ATTAGTA | 115 | 6.412847E-8 | 17.695652 | 2 |
TATCAAC | 4160 | 0.0 | 16.409855 | 3 |
ATCAACG | 4175 | 0.0 | 16.350899 | 4 |
TCAACGC | 4185 | 0.0 | 16.267622 | 5 |
CAACGCA | 4215 | 0.0 | 16.107948 | 6 |
GTGTAAG | 315 | 0.0 | 15.857143 | 1 |
CGCTATA | 225 | 0.0 | 15.622222 | 2 |
AACGCAG | 4390 | 0.0 | 15.507972 | 7 |
GTTTAAC | 275 | 0.0 | 15.472728 | 33 |
TACGGGT | 300 | 0.0 | 15.416667 | 4 |
TATTAGA | 385 | 0.0 | 15.376623 | 2 |
ATTAGAG | 350 | 0.0 | 15.328571 | 3 |