FastQCFastQC Report
Thu 28 Apr 2016
ERR1041878.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041878.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4284412
Sequences flagged as poor quality0
Sequence length43
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT64300.15007893731975355No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT61990.14468729898058358No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA35600.030.4522461
GTATCAA53300.020.2701682
GTATACG801.618349E-518.51
CTTAGAC2900.017.8620683
TCGCTAT6450.017.7829461
CGCTATA6350.017.4803142
TATACTG3900.015.6538475
TTAGACC2750.015.4727284
CGTATAC855.368393E-415.2352943
CTATACT2700.015.0740734
GTCTAAG3200.015.031251
GTATACT1904.5656634E-1014.6052644
TGTATAC2059.276846E-1114.4390243
CTAGTAC1956.7484507E-1014.230773
TATCAAC77550.013.9555133
TCAACGC77650.013.889895
ATCAACG77950.013.8364334
TAGTACT2950.013.796614
CAACGCA78550.013.7071926
TTAGACA3550.013.5492954