Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041878.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4284412 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 54 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 6430 | 0.15007893731975355 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6199 | 0.14468729898058358 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3560 | 0.0 | 30.452246 | 1 |
GTATCAA | 5330 | 0.0 | 20.270168 | 2 |
GTATACG | 80 | 1.618349E-5 | 18.5 | 1 |
CTTAGAC | 290 | 0.0 | 17.862068 | 3 |
TCGCTAT | 645 | 0.0 | 17.782946 | 1 |
CGCTATA | 635 | 0.0 | 17.480314 | 2 |
TATACTG | 390 | 0.0 | 15.653847 | 5 |
TTAGACC | 275 | 0.0 | 15.472728 | 4 |
CGTATAC | 85 | 5.368393E-4 | 15.235294 | 3 |
CTATACT | 270 | 0.0 | 15.074073 | 4 |
GTCTAAG | 320 | 0.0 | 15.03125 | 1 |
GTATACT | 190 | 4.5656634E-10 | 14.605264 | 4 |
TGTATAC | 205 | 9.276846E-11 | 14.439024 | 3 |
CTAGTAC | 195 | 6.7484507E-10 | 14.23077 | 3 |
TATCAAC | 7755 | 0.0 | 13.955513 | 3 |
TCAACGC | 7765 | 0.0 | 13.88989 | 5 |
ATCAACG | 7795 | 0.0 | 13.836433 | 4 |
TAGTACT | 295 | 0.0 | 13.79661 | 4 |
CAACGCA | 7855 | 0.0 | 13.707192 | 6 |
TTAGACA | 355 | 0.0 | 13.549295 | 4 |