Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041875.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7271913 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 52 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 12476 | 0.17156420875772302 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11307 | 0.15548865889897198 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 8027 | 0.11038360882480304 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5190 | 0.0 | 29.728323 | 1 |
GTATCAA | 7830 | 0.0 | 19.610472 | 2 |
CGCTATA | 1090 | 0.0 | 15.444954 | 2 |
TTATACG | 440 | 0.0 | 15.136364 | 35 |
GTGTTAG | 1950 | 0.0 | 14.8 | 1 |
TATACGA | 445 | 0.0 | 14.550563 | 36 |
GTATACG | 230 | 1.8189894E-12 | 14.478261 | 1 |
TATCAAC | 11205 | 0.0 | 13.769746 | 3 |
GTATTAG | 820 | 0.0 | 13.762195 | 1 |
GTCGCTA | 585 | 0.0 | 13.59829 | 37 |
ATCAACG | 11215 | 0.0 | 13.543022 | 4 |
TAGATAG | 385 | 0.0 | 13.454545 | 5 |
TCGCTAT | 1280 | 0.0 | 13.441406 | 1 |
TATATCG | 180 | 5.1715688E-8 | 13.361111 | 5 |
TCAACGC | 11400 | 0.0 | 13.290789 | 5 |
TATACTG | 910 | 0.0 | 13.214285 | 5 |
GTCTATA | 565 | 0.0 | 13.097345 | 1 |
CAACGCA | 11705 | 0.0 | 12.960273 | 6 |
GTATAAG | 715 | 0.0 | 12.937063 | 1 |
TAGACTC | 590 | 0.0 | 12.855932 | 5 |