FastQCFastQC Report
Thu 28 Apr 2016
ERR1041872.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041872.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences817889
Sequences flagged as poor quality0
Sequence length43
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGATAA355.6286626E-737.014
GGTATCA6400.029.4843751
TAACGTT454.0063987E-628.77777718
GACGATA603.7245947E-521.58333213
GTATCAA8700.021.477012
CGCCGTA450.003824878720.55555525
ATAACGT656.899017E-519.92307717
GTTACCT759.260411E-619.73333437
TTTAGCG851.2444088E-619.58823626
ATTAGTC500.007033189818.518
TTAATCC701.21865174E-418.54
CGATTGA609.2337106E-418.530
GTAATAC609.2337106E-418.53
ACGTGAC609.2337106E-418.57
GTCGTTA701.21865174E-418.534
GTATAGG500.007033189818.51
CGATAAC701.21865174E-418.515
GTATTAG1156.398113E-817.6956521
ATATACA953.6038127E-617.5263164
TATTAGA953.6038127E-617.5263162
Produced by FastQC (version 0.11.5)