FastQCFastQC Report
Thu 28 Apr 2016
ERR1041870.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041870.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6098967
Sequences flagged as poor quality0
Sequence length43
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA33100.029.9577051
GTATCAA50250.019.4756222
GTATACG1451.5643309E-1017.8620681
TTAACGG4050.015.98765535
TTATACG2900.015.94827635
GTATTAG8700.015.0977021
TAATACG2600.014.9423074
TATATAC2850.014.9298243
TTTAGCG4350.014.88505826
GTCTATA2500.014.7999991
TATACGA3300.014.01515136
TATCAAC70600.013.9667143
GTACGTA2151.9826984E-1013.76744213
GTTTAGG7550.013.7218551
GTCTAAT2304.0017767E-1113.6739131
TTTAACG4750.013.63157834
TCAACGC72250.013.6221465
TATTAGA6950.013.575542
ATCAACG72450.013.5334714
TATACCG2750.013.4545465
Produced by FastQC (version 0.11.5)