FastQCFastQC Report
Thu 28 Apr 2016
ERR1041867.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041867.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11056060
Sequences flagged as poor quality0
Sequence length43
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA59200.028.281251
GTATCAA89450.018.5310232
CGCTATA7650.015.9607842
GTATTAG11350.015.6475771
CTAGTAC5100.015.2352943
TAGACAG14750.014.4237295
TATACTG11250.014.1422225
GTGTTAG21800.013.7477061
GTGTAAG15650.013.5942481
TATACCG4000.013.4124995
TTAACGG4700.013.382977535
GTATAGG7150.013.1958041
TACACTG19500.013.0923075
TATATTG12000.012.955
TATCAAC129200.012.9156353
TTATACG4300.012.90697735
CTACACT15800.012.8797464
TCGCTAT10500.012.8619041
ATCAACG131900.012.66527754
TACACAG26950.012.5621535
Produced by FastQC (version 0.11.5)