FastQCFastQC Report
Thu 28 Apr 2016
ERR1041864.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041864.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4501729
Sequences flagged as poor quality0
Sequence length43
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT73220.16264861789770108No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT67210.14929819187250054No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT48300.10729210932066324No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA35850.030.910741
GTATCAA53550.020.486462
CGCTATA5450.016.293582
TTAACGG1751.3278623E-1015.85714335
GTACTAG2055.456968E-1215.3414641
TCGCTAT6100.015.1639351
TATACTG4900.014.7244895
TATCAAC75800.014.7170183
GTGTTAG7950.014.6603771
ATCAACG75050.014.5929384
TTTAGCG1651.648732E-814.57575926
TCAACGC76650.014.3607315
GTATAGG3800.014.1184221
CAACGCA77900.014.059056
TAGGACA5150.014.0097084
CTATACT4150.013.8192774
AACGCAG80750.013.6315797
CTAGTAC2457.2759576E-1213.5918363
GTATAAG3450.013.4057971
TCTATAC2900.013.396553