Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041862.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2762373 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 56 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CCCTCAGAGAGGCGAGGGTTCGAGGGCACGAGTTCGAGGCCAA | 3028 | 0.10961589908386737 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 2961 | 0.1071904482124608 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2851 | 0.10320836469224107 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1865 | 0.0 | 29.361929 | 1 |
TATACGA | 75 | 3.744699E-7 | 22.2 | 36 |
GTATCAA | 2700 | 0.0 | 20.212963 | 2 |
TATACGC | 55 | 5.1456055E-4 | 20.181818 | 5 |
GTATACG | 65 | 6.906614E-5 | 19.923077 | 1 |
TATAAGG | 145 | 1.546141E-10 | 17.862068 | 2 |
TCGCTAA | 85 | 2.7253558E-5 | 17.411764 | 14 |
CGTTAGA | 75 | 2.0685903E-4 | 17.266666 | 24 |
TTACGTA | 65 | 0.0015806931 | 17.076923 | 4 |
TTATACG | 100 | 5.8837995E-6 | 16.650002 | 35 |
TCGCTAT | 405 | 0.0 | 15.987655 | 1 |
GTGTTAG | 465 | 0.0 | 15.51613 | 1 |
GTATTAA | 155 | 7.221388E-9 | 15.516129 | 1 |
CCTAGTA | 235 | 0.0 | 14.957446 | 2 |
CGCTATA | 325 | 0.0 | 14.8 | 2 |
TACGTAG | 100 | 1.0942461E-4 | 14.8 | 14 |
TCCTACA | 505 | 0.0 | 14.653466 | 2 |
TAATACT | 240 | 0.0 | 14.645834 | 4 |
GTCTTAG | 230 | 1.8189894E-12 | 14.478261 | 1 |
CCTATAC | 205 | 9.276846E-11 | 14.439024 | 3 |