Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041858.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4846038 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 55 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 8129 | 0.16774527975224296 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7538 | 0.15554975012577285 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 5349 | 0.11037882905581838 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3795 | 0.0 | 30.418972 | 1 |
GTATCAA | 5810 | 0.0 | 19.837349 | 2 |
CGCTATA | 475 | 0.0 | 17.526316 | 2 |
GTCTTAG | 670 | 0.0 | 16.567163 | 1 |
GTATAGA | 485 | 0.0 | 16.020618 | 1 |
GTATTAG | 670 | 0.0 | 15.186567 | 1 |
TATACTG | 520 | 0.0 | 14.942307 | 5 |
TAAGACA | 375 | 0.0 | 14.800001 | 4 |
TCTGTCG | 1175 | 0.0 | 14.8 | 8 |
TAGACCG | 125 | 2.9633175E-6 | 14.799999 | 5 |
TAACCGG | 315 | 0.0 | 14.68254 | 22 |
GTCTAGA | 500 | 0.0 | 14.429999 | 1 |
AACGGTA | 90 | 8.280788E-4 | 14.388888 | 18 |
CTAGACT | 490 | 0.0 | 14.346938 | 4 |
TCGCTAT | 620 | 0.0 | 14.32258 | 1 |
CTAGTAC | 220 | 1.8189894E-11 | 14.295454 | 3 |
TATAGAG | 290 | 0.0 | 14.034483 | 2 |
CCTATAC | 465 | 0.0 | 13.924731 | 3 |
TAATACT | 620 | 0.0 | 13.725806 | 4 |
TATATTG | 675 | 0.0 | 13.703703 | 5 |