FastQCFastQC Report
Thu 28 Apr 2016
ERR1041856.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041856.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1117667
Sequences flagged as poor quality0
Sequence length43
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA8250.030.0484871
GTATCAA11050.022.434392
TTATGAC753.7405698E-722.23
GTATAAG603.7261685E-521.5833321
CGTATAC500.007034762818.53
GTATATA609.236599E-418.51
TACACTG1306.9667294E-1018.4999985
CTACACT1653.6379788E-1217.9393944
CTTACAC1258.576535E-917.763
TAGGACA1156.40448E-817.6956524
CCTAGTA852.7230068E-517.4117642
GTCTACG1201.0410986E-716.9583321
GTTAGAC904.4457796E-516.4444453
GTCCTAC1606.2937033E-1016.18751
ATAAGAC1059.342553E-615.8571443
TACGGCT700.002592434215.8571424
GTATACT700.002592434215.8571424
TAGGATA700.002592434215.8571424
TATAATA700.002592434215.8571422
TATACAC957.0593946E-515.5789483
Produced by FastQC (version 0.11.5)