Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041854.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1186112 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 54 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 3524 | 0.29710516376193813 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3337 | 0.28133936761452544 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 2137 | 0.18016848324610155 | No Hit |
CCCACGCCCTCTGCATCTTTTTTCTTTTCCCCCACGGATCTTT | 1318 | 0.11111935466465224 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1690 | 0.0 | 29.008877 | 1 |
GTATCAA | 2330 | 0.0 | 20.881973 | 2 |
TATACTG | 125 | 1.8189894E-11 | 20.72 | 5 |
GTATACG | 45 | 0.0038258794 | 20.555555 | 1 |
GTATTGG | 110 | 1.7553248E-9 | 20.181818 | 1 |
CTTAATA | 70 | 1.21923855E-4 | 18.5 | 2 |
TTATACC | 70 | 1.21923855E-4 | 18.5 | 4 |
TTAATAC | 75 | 2.0673365E-4 | 17.266666 | 3 |
TAATACT | 100 | 5.878108E-6 | 16.650002 | 4 |
CCTTATA | 80 | 3.3826803E-4 | 16.1875 | 2 |
TGTCCGT | 80 | 3.3826803E-4 | 16.1875 | 10 |
GTACTGT | 195 | 1.8189894E-12 | 16.128206 | 6 |
TACTAGG | 115 | 1.2422006E-6 | 16.086956 | 2 |
TAATATA | 70 | 0.0025925583 | 15.857143 | 4 |
TAGCACC | 140 | 3.4728146E-8 | 15.857143 | 4 |
GTTACAC | 70 | 0.0025925583 | 15.857143 | 3 |
TTAGGCA | 105 | 9.343525E-6 | 15.857142 | 4 |
TAAGACT | 105 | 9.343525E-6 | 15.857142 | 4 |
CCTACAC | 235 | 0.0 | 15.744679 | 3 |
GTGTACA | 295 | 0.0 | 15.677965 | 1 |