FastQCFastQC Report
Thu 28 Apr 2016
ERR1041845.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041845.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22994747
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA172500.028.302321
GTATCAA265700.018.3328932
TCGCTAA14150.017.51943414
CGCTATA29900.016.6438142
CTTATAC157650.016.11195837
GTATTAG50200.015.9940231
TCTTATA260550.015.41489137
TATACAC57800.015.17128137
TCGCTAT35800.014.7276531
TATTAGA40600.014.1256162
GTATTAA16350.013.4648311
TAATACT42900.013.4114234
CTAATAC49350.013.2705163
TATATTG47100.013.15817455
ATTAGAG40600.013.032023
GCTATAT41700.012.9100723
CGTCTAA18950.012.8865431
GTATAGA20650.012.721551
GTGTAAG33250.012.5744361
ATCAACG389850.012.5563684