FastQCFastQC Report
Thu 28 Apr 2016
ERR1041844.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041844.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13890449
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA148450.028.675311
TTAACGC5400.023.98148235
GTATCAA224200.018.9785922
TATTAGA42900.017.03382
TCGCTAA15250.016.98360614
ATTAGAG41850.016.3118273
GTATTAG56300.016.29841
TATACAC38150.016.19659237
TAATACG10950.015.7123284
ATCTTAC30100.015.6727561
GTTTACC27300.015.4505515
TTAGCGA14950.014.84949827
TTTAGCG10900.014.76605526
TATGCCG10950.014.69862933
CGTCTAA14350.014.6968641
CTTATAC103400.014.63539737
GTTAATA19200.014.4531242
TTAGAGG54350.014.3302664
TCTTATA152000.014.22796137
GGTAAAC24100.014.12448135
Produced by FastQC (version 0.11.5)