FastQCFastQC Report
Thu 28 Apr 2016
ERR1041839.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041839.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36492474
Sequences flagged as poor quality0
Sequence length43
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA183350.025.043361
GTATTAG115450.016.729321
TTAACGG59800.016.24163835
GTATCAA288900.015.8104872
TAACGGC62150.015.7465836
TATTAGA100200.015.5459072
ATTAGAG88000.014.9261363
CTTATAC172000.014.91831337
TTTAACG71950.014.70743534
TAATACT96350.014.4582254
TCTTATA258250.014.24840237
CGCTATA28450.014.2407732
TATACTG52950.013.6959395
TTAGAGG125300.013.6276924
CTAATAC101800.013.6114923
TCGCTAA20050.013.56359114
GTATAGG68650.013.2316091
TACCCCG48900.013.1656445
CTCTAAT74700.013.0515391
CGAACTA53250.012.95868529