FastQCFastQC Report
Thu 28 Apr 2016
ERR1041838.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041838.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22747893
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA125400.023.9290281
GTATTAG59150.017.3271331
TATTAGA46400.016.6659472
GTATCAA184050.016.1931532
CGCTATA33600.015.5267852
TAATACT45150.015.3244734
CTTATAC120150.015.05867537
ATTAGAG45650.014.7108433
TCTTATA189950.014.65780437
TCGCTAT36100.014.5540151
TATACTG27700.014.0920565
TTAACGG30050.014.03660535
TTAGACT18850.013.9363384
TCGCTAA10250.013.53658414
TAACGGC31450.013.29411636
TCTATAC18900.013.2142853
TTTAACG36300.013.09779534
TTAGAGG66450.012.9736644
GTATAGG30900.012.9320381
CGAACTA22350.012.82997629
Produced by FastQC (version 0.11.5)