FastQCFastQC Report
Thu 28 Apr 2016
ERR1041837.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041837.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13392572
Sequences flagged as poor quality0
Sequence length43
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA57850.022.9930861
GTATTAG25500.017.9921571
GCTTACC22100.017.57918428
ATTAGAG19750.017.0481013
TATTAGA22650.016.6622522
TCGCTAA7850.015.5541414
CTTATAC69200.015.29190837
GTATCAA86100.015.2555162
TTAGCGA6700.015.18656727
TCTTATA109400.015.05027437
TTAACGG15200.014.97039335
CGCTATA14150.014.9045932
TATACTG17550.014.8632485
GGGCTTA26250.014.826
TAATACT19150.014.4908614
TTAGACT8050.014.4782614
TTTAACG17800.014.44662934
CTTACCT27650.014.18444729
GTATTAA11050.014.0633481
TTAGAGG28450.014.0456934
Produced by FastQC (version 0.11.5)