FastQCFastQC Report
Thu 28 Apr 2016
ERR1041835.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041835.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1612255
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTAACGC451.323535E-424.66666835
TTAGACT1155.456968E-1222.521744
AATCGAT753.742698E-722.222
GGTATCA10500.022.0238111
CGCTATA902.1533106E-618.52
AACGGTA500.00703608218.49999818
ATCGATA852.7242178E-517.41176423
CGTTTAG752.0679168E-417.2666661
TTTAGCG650.001580307317.07692326
GTCCTAA1757.2759576E-1216.9142861
TATACAG2250.016.4444455
TATGCCG2700.016.44444333
TAATGGT1606.2937033E-1016.18754
GTATTAG2950.015.6779661
GTATCAA14800.015.52
TAGACTG2150.015.4883725
CTAGTAC855.365816E-415.2352933
CTACGCT855.365816E-415.2352934
CTATTAG1353.9747283E-715.0740731
TATTAGA2950.015.0508472
Produced by FastQC (version 0.11.5)