FastQCFastQC Report
Thu 28 Apr 2016
ERR1041833.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041833.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4717179
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA49450.023.4944381
TCGCTAA3050.023.04918114
TTAACGC2250.019.73333435
CTCGCTA4200.018.513
CATCGTT6800.017.95588332
GTATTAG17900.017.8798871
TATTAGA14350.017.404182
TCGTTGT7250.017.35172534
GTATCAA68100.017.0058752
CGAACTA6850.016.2043829
ATTAGAG14350.015.8571423
CGTTGTA7700.015.61688235
CGACCAA8300.015.60240912
CTTATAC34200.015.4707637
TTAGAGG20650.015.2300244
ATAATAC5350.015.2149523
GTTTACC7550.015.19205415
GTATACG1353.9794577E-715.0740731
GTACTAG3200.015.0312511
CCTCTAG17150.014.9941691
Produced by FastQC (version 0.11.5)