FastQCFastQC Report
Thu 28 Apr 2016
ERR1041832.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041832.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2848770
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA15200.023.8552631
GTATTAG8150.020.2024541
ACGCGAA656.906709E-519.92307734
TATTAGA6950.018.899282
TTAACGC801.6180386E-518.535
TTAGACT2150.017.2093034
ATTAGAG6650.016.9699253
GTATCAA22000.016.565912
TAACCTA2500.016.2799995
ATTAGAC1606.311893E-1016.18753
GTATTAA2300.016.0869561
GTACTAG1151.2436958E-616.0869561
TATTAAC3000.016.0333332
TCGCTAA1659.749783E-1015.6969714
TTAGTAC1201.9378494E-615.4166663
GTATAGG4300.015.0581391
TTAGAGG9100.015.0439574
TTTAGCG1752.242814E-914.826
CGCTATA2251.8189894E-1214.82
TCTATAC2650.014.66037753
Produced by FastQC (version 0.11.5)