FastQCFastQC Report
Thu 28 Apr 2016
ERR1041830.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041830.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5082117
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA38900.024.4922891
CGTCTAA2200.019.3409081
GTATCAA53800.017.6403352
GTATTAG12100.017.2768611
TATTAGA10550.016.8341222
TTAACGC1554.0199666E-1016.70967935
TTAGACT3150.016.4444454
ATTAGAG11050.015.4027153
CTTATAC35550.014.98734337
TCTTATA53100.014.94632737
TAATACT9350.014.641714
GCGTTAG908.2808826E-414.3888891
GTGTAAG8150.014.3006131
TTAGAGG14350.014.0522654
TATACTG6600.013.7348495
ATCTTAC7050.013.64539051
TCTATAC3400.013.60294153
TAGACAG7100.013.5492955
TATAACT6050.013.4545464
TTTATAC4400.013.4545453
Produced by FastQC (version 0.11.5)