Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041826.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7771320 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 53 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3825 | 0.0 | 23.40915 | 1 |
GTATTAG | 1495 | 0.0 | 17.819397 | 1 |
TATTAGA | 1265 | 0.0 | 17.110672 | 2 |
GTATCAA | 5350 | 0.0 | 16.56355 | 2 |
CGCTATA | 680 | 0.0 | 15.507353 | 2 |
TACCCCG | 815 | 0.0 | 15.208589 | 5 |
ATTAGAG | 1285 | 0.0 | 15.116732 | 3 |
TATACTG | 920 | 0.0 | 15.081521 | 5 |
GCTTACC | 1245 | 0.0 | 14.859438 | 28 |
CTTATAC | 3750 | 0.0 | 14.652 | 37 |
TCTTATA | 5680 | 0.0 | 14.102993 | 37 |
TCGCTAT | 795 | 0.0 | 13.962263 | 1 |
TAATACG | 360 | 0.0 | 13.875001 | 4 |
TTAACGC | 200 | 9.858923E-10 | 13.875001 | 35 |
TATTAGG | 540 | 0.0 | 13.703704 | 2 |
GTCTATA | 460 | 0.0 | 13.673912 | 1 |
TTAGAGG | 1800 | 0.0 | 13.669444 | 4 |
TAACGTA | 95 | 0.0012462038 | 13.631579 | 9 |
TTCTATA | 750 | 0.0 | 13.566666 | 2 |
TAGAACA | 920 | 0.0 | 13.271738 | 4 |