FastQCFastQC Report
Thu 28 Apr 2016
ERR1041826.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041826.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7771320
Sequences flagged as poor quality0
Sequence length43
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA38250.023.409151
GTATTAG14950.017.8193971
TATTAGA12650.017.1106722
GTATCAA53500.016.563552
CGCTATA6800.015.5073532
TACCCCG8150.015.2085895
ATTAGAG12850.015.1167323
TATACTG9200.015.0815215
GCTTACC12450.014.85943828
CTTATAC37500.014.65237
TCTTATA56800.014.10299337
TCGCTAT7950.013.9622631
TAATACG3600.013.8750014
TTAACGC2009.858923E-1013.87500135
TATTAGG5400.013.7037042
GTCTATA4600.013.6739121
TTAGAGG18000.013.6694444
TAACGTA950.001246203813.6315799
TTCTATA7500.013.5666662
TAGAACA9200.013.2717384
Produced by FastQC (version 0.11.5)