FastQCFastQC Report
Thu 28 Apr 2016
ERR1041824.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041824.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42542984
Sequences flagged as poor quality0
Sequence length43
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA203600.023.8700891
GTATTAG123300.016.789541
TATTAGA104450.016.3657262
GTATCAA306150.015.7354242
TTAACGG67850.015.26897635
ATTAGAG100850.015.0237983
TAACGGC71850.014.41892836
TAATACT103050.014.2721994
TCTTATA280750.014.25966337
CTTATAC189950.014.00526437
TATACTG60150.013.8711575
TCGCTAA26250.013.813333514
CGCTATA39400.013.7576152
CTAATAC101200.013.7104753
TTTAACG85250.013.51964834
TACCCCG54500.013.3743125
TTAGAGG138950.013.1410584
TTAGACT41200.013.0667484
TTAGCGA31450.013.05882427
TCTATAC41200.012.9769423
Produced by FastQC (version 0.11.5)