FastQCFastQC Report
Thu 28 Apr 2016
ERR1041823.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041823.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3717579
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA42250.026.403551
GTATCAA59850.018.6081872
TCGCTAA2350.018.10638214
GTATTAG9700.017.7371141
TTAACGC1054.8043876E-717.6190535
TATTAGA8200.017.5975632
ATTAGAG8100.016.216053
GTCTAGA3650.015.7123291
GTATTAT3250.015.3692311
TATACTG3650.015.205485
TTAGACT3050.015.1639354
ATACCGC3950.014.9873427
TCTTATA36800.014.67934837
CTTATAC25250.014.65346637
TTTAACG7250.014.54482734
CCTCTAG10750.014.4558141
ATCCGTA2059.276846E-1114.43902512
TAATAGT5000.014.4299994
CGCTATA2950.014.4237292
TCGCTAT3400.014.14705851
Produced by FastQC (version 0.11.5)