FastQCFastQC Report
Thu 28 Apr 2016
ERR1041822.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041822.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6915960
Sequences flagged as poor quality0
Sequence length43
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGCTAA3150.019.96825414
GGTATCA72700.019.3143041
TATTAGA9600.017.9218752
GTATTAG11950.017.029291
CGTCTAA3250.015.9384611
ATTAGAG10950.015.8812793
TAAGTCG957.067867E-515.5789485
TAATACT9100.015.450554
ATAATAC5400.015.4166673
GTATCAA95150.014.6794542
CTTATAC51350.014.51898837
TCTTATA78450.014.17272137
GTATATA5250.014.0952381
TATACAC21800.013.91743137
TATACTG7500.013.8133345
TAATACA5500.013.790914
TTAGAGG13750.013.7236364
GTATTAA4100.013.5365851
CGTATTA1951.0286385E-813.28205215
TCTAGAC6450.013.1937983
Produced by FastQC (version 0.11.5)