Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041821.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 686919 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 53 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACTG | 50 | 9.084135E-6 | 25.900002 | 5 |
ACATATA | 50 | 9.084135E-6 | 25.900002 | 1 |
GGTATCA | 565 | 0.0 | 25.539824 | 1 |
TAGCGGA | 50 | 2.7005686E-4 | 22.2 | 17 |
GTAAGGC | 115 | 1.3460522E-10 | 20.913042 | 16 |
TTTCGTG | 55 | 5.1401986E-4 | 20.181818 | 24 |
TTGGTCG | 55 | 5.1401986E-4 | 20.181818 | 10 |
AGTTATA | 55 | 5.1401986E-4 | 20.181818 | 35 |
CTATTAA | 55 | 5.1401986E-4 | 20.181818 | 1 |
CATATAA | 65 | 6.896963E-5 | 19.923077 | 2 |
CTAATGG | 65 | 6.896963E-5 | 19.923077 | 3 |
TCAGTTA | 75 | 9.256872E-6 | 19.733334 | 33 |
TATGAGT | 85 | 1.2438159E-6 | 19.588234 | 4 |
TTAGCGA | 95 | 1.6736703E-7 | 19.473682 | 27 |
TAATAGT | 115 | 3.0431693E-9 | 19.304346 | 4 |
GTGTAGG | 115 | 3.0431693E-9 | 19.304346 | 1 |
TACACTG | 125 | 4.110916E-10 | 19.24 | 5 |
AATAGTG | 135 | 5.638867E-11 | 19.185184 | 5 |
GTATTGA | 80 | 1.6151276E-5 | 18.5 | 1 |
CTAAGCC | 50 | 0.007032071 | 18.5 | 3 |