Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041816.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 68408974 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 684419 | 1.0004813111215496 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 631134 | 0.922589483654586 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 457271 | 0.668437155628149 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 120040 | 0.17547405403273553 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 217000 | 0.0 | 26.997213 | 1 |
GTATCAA | 325090 | 0.0 | 18.020271 | 2 |
CGCTATA | 15500 | 0.0 | 17.15129 | 2 |
TCGCTAT | 15770 | 0.0 | 16.963223 | 1 |
CTTATAC | 60875 | 0.0 | 15.751212 | 37 |
TATACAC | 26160 | 0.0 | 15.607608 | 37 |
GTATTAG | 12330 | 0.0 | 14.523925 | 1 |
GCTTACC | 9220 | 0.0 | 14.486985 | 28 |
TATACTG | 9485 | 0.0 | 14.3357935 | 5 |
ATCTAGT | 15260 | 0.0 | 13.844691 | 1 |
GCTATAT | 20635 | 0.0 | 13.627333 | 3 |
ACGCCCT | 39425 | 0.0 | 13.514268 | 4 |
TCTTATA | 94730 | 0.0 | 13.480998 | 37 |
TAATACT | 12690 | 0.0 | 13.076832 | 4 |
TCTATAC | 5845 | 0.0 | 13.0718565 | 3 |
GTACTAG | 4325 | 0.0 | 13.003469 | 1 |
CCCACGC | 41155 | 0.0 | 12.95517 | 1 |
TATATTG | 24980 | 0.0 | 12.871497 | 5 |
TTAACGG | 5015 | 0.0 | 12.800599 | 35 |
TAGACCG | 1225 | 0.0 | 12.685715 | 5 |