Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041813.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 724505 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 54 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGCCGTCTT | 829 | 0.11442295084229921 | RNA PCR Primer, Index 26 (100% over 22bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCTATA | 35 | 8.866218E-4 | 26.42857 | 2 |
TACGCAG | 60 | 1.3362678E-6 | 24.666666 | 5 |
CTATACA | 55 | 1.9013998E-5 | 23.545454 | 4 |
TAAGACA | 55 | 1.9013998E-5 | 23.545454 | 4 |
TTTATAG | 95 | 2.8012437E-10 | 23.368422 | 3 |
TCTATAG | 50 | 2.700766E-4 | 22.2 | 3 |
TCTAATA | 60 | 3.7238402E-5 | 21.583332 | 2 |
CAATACT | 60 | 3.7238402E-5 | 21.583332 | 4 |
GGTATCA | 755 | 0.0 | 20.582783 | 1 |
ATACGCA | 45 | 0.0038244629 | 20.555557 | 4 |
GTATTAC | 50 | 0.007032432 | 18.5 | 1 |
ATCTAGT | 60 | 9.232326E-4 | 18.5 | 1 |
CCTAGAC | 80 | 1.6153264E-5 | 18.5 | 3 |
TAGACAG | 80 | 1.6153264E-5 | 18.5 | 5 |
CTATATT | 90 | 2.1499818E-6 | 18.5 | 4 |
GCTATTC | 60 | 9.232326E-4 | 18.5 | 3 |
GATTTAT | 80 | 1.6153264E-5 | 18.5 | 1 |
TATATAA | 50 | 0.007032432 | 18.5 | 2 |
CGTCTAA | 50 | 0.007032432 | 18.5 | 1 |
TTATAGT | 60 | 9.232326E-4 | 18.5 | 4 |