FastQCFastQC Report
Thu 28 Apr 2016
ERR1041813.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041813.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences724505
Sequences flagged as poor quality0
Sequence length43
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGCCGTCTT8290.11442295084229921RNA PCR Primer, Index 26 (100% over 22bp)

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCTATA358.866218E-426.428572
TACGCAG601.3362678E-624.6666665
CTATACA551.9013998E-523.5454544
TAAGACA551.9013998E-523.5454544
TTTATAG952.8012437E-1023.3684223
TCTATAG502.700766E-422.23
TCTAATA603.7238402E-521.5833322
CAATACT603.7238402E-521.5833324
GGTATCA7550.020.5827831
ATACGCA450.003824462920.5555574
GTATTAC500.00703243218.51
ATCTAGT609.232326E-418.51
CCTAGAC801.6153264E-518.53
TAGACAG801.6153264E-518.55
CTATATT902.1499818E-618.54
GCTATTC609.232326E-418.53
GATTTAT801.6153264E-518.51
TATATAA500.00703243218.52
CGTCTAA500.00703243218.51
TTATAGT609.232326E-418.54