FastQCFastQC Report
Thu 28 Apr 2016
ERR1041812.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041812.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8760158
Sequences flagged as poor quality0
Sequence length43
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA88700.026.3213081
GTATCAA129000.018.0267452
GTATTAG11850.016.3924051
GTCCTAA9350.016.0267371
CTTATAC73350.015.56169137
CGCTATA11250.015.2933322
TATTAGA11300.015.2256642
TATACTG9650.014.5699475
TCTTATA113750.014.49098937
GTACTAG5250.014.44761851
TCGCTAT12250.014.0448981
GTATAGG7700.013.6948051
TATACAC30450.013.669950537
TAATACT10850.013.4700464
TTAAGAC6650.013.3533833
TAGAACA12300.013.2357724
TAGACAG12450.013.0763045
TATATTG16800.012.9940475
AACGCAG181550.012.9107687
TCAACGC181350.012.8842015
Produced by FastQC (version 0.11.5)