FastQCFastQC Report
Thu 28 Apr 2016
ERR1041810.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041810.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32084940
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT495820.1545335599817235No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT483080.15056284973573272No Hit
TATCAACGCAGAGTACGGGGAGCGGATAACAATTTCACACATA413090.12874887719908468No Hit
GGTATCAACGCAGAGTACGGGGAGCGGATAACAATTTCACACA393470.12263385875117734No Hit
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCC329370.10265563843971659No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT322250.10043652878889597No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA554400.029.4184681
TTAACGC10700.020.74766335
GTATCAA838000.019.4868132
GTATTAG140650.017.7436891
TATTAGA119200.017.367032
ATTAGAG112450.016.764343
TCGCTAA44800.015.81584914
CTCGCTA45500.015.65384713
CGCTATA27700.015.2942242
TTAGAGG152800.015.2915574
CGTATTA19000.015.18947315
CGTAGCG25000.015.1715
TTTAACG98050.015.11320834
ACCGCCT118700.014.93091812
TACCCCG64000.014.7999995
TAATACT112100.014.6382694
TTAGACT29500.014.6118654
TTAACGG85900.014.55878835
TAACGGC86850.014.3995436
GGCACCG120150.014.3657939