Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041810.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 32084940 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 49582 | 0.1545335599817235 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 48308 | 0.15056284973573272 | No Hit |
TATCAACGCAGAGTACGGGGAGCGGATAACAATTTCACACATA | 41309 | 0.12874887719908468 | No Hit |
GGTATCAACGCAGAGTACGGGGAGCGGATAACAATTTCACACA | 39347 | 0.12263385875117734 | No Hit |
GTATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCC | 32937 | 0.10265563843971659 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 32225 | 0.10043652878889597 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 55440 | 0.0 | 29.418468 | 1 |
TTAACGC | 1070 | 0.0 | 20.747663 | 35 |
GTATCAA | 83800 | 0.0 | 19.486813 | 2 |
GTATTAG | 14065 | 0.0 | 17.743689 | 1 |
TATTAGA | 11920 | 0.0 | 17.36703 | 2 |
ATTAGAG | 11245 | 0.0 | 16.76434 | 3 |
TCGCTAA | 4480 | 0.0 | 15.815849 | 14 |
CTCGCTA | 4550 | 0.0 | 15.653847 | 13 |
CGCTATA | 2770 | 0.0 | 15.294224 | 2 |
TTAGAGG | 15280 | 0.0 | 15.291557 | 4 |
CGTATTA | 1900 | 0.0 | 15.189473 | 15 |
CGTAGCG | 2500 | 0.0 | 15.17 | 15 |
TTTAACG | 9805 | 0.0 | 15.113208 | 34 |
ACCGCCT | 11870 | 0.0 | 14.930918 | 12 |
TACCCCG | 6400 | 0.0 | 14.799999 | 5 |
TAATACT | 11210 | 0.0 | 14.638269 | 4 |
TTAGACT | 2950 | 0.0 | 14.611865 | 4 |
TTAACGG | 8590 | 0.0 | 14.558788 | 35 |
TAACGGC | 8685 | 0.0 | 14.39954 | 36 |
GGCACCG | 12015 | 0.0 | 14.365793 | 9 |