FastQCFastQC Report
Thu 28 Apr 2016
ERR1041807.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041807.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1318640
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTAACGC659.393989E-825.61538535
GGTATCA9400.024.010641
TTAGCGA1054.0017767E-1122.90476427
TATACTG1900.021.4210535
TCGCTAA951.6765807E-719.47368414
CGCTATA1052.2600943E-819.3809532
TAGCGAG1153.0522642E-919.30434628
TAGGTCG609.237798E-418.521
TATTAGA3800.018.52
TAATACT3150.018.206354
TCTATAC953.6072015E-617.5263163
TTAATAC1301.3935278E-817.0769233
TAGGGTC3050.016.9836064
ATCTAGA1201.04151695E-716.9583341
CATAGGG2800.016.5178572
CGTCTAA904.446754E-516.4444451
GTATTAG5200.016.3653851
CGAACTA1251.6581362E-716.27999929
ATCCGTA803.3830374E-416.187512
ATTAGAG4250.016.1058833
Produced by FastQC (version 0.11.5)