FastQCFastQC Report
Thu 28 Apr 2016
ERR1041806.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041806.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3162576
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA25900.025.1428571
TTAACGC1450.021.68965535
TATAACG450.003827269220.5555532
TATTAGA8950.019.016762
GTATCAA34900.018.6060182
ATATAAC4100.018.5000023
ATTAGAG8900.018.53
GTTTACC5100.018.515
ATCTTAC5800.018.51
TACCCCG5550.018.3333345
GTATTAG10400.018.3221151
ACATATA3850.017.7792221
GTTTAGG5900.016.9322031
AACCGTA1005.8843434E-616.657
TCTTACC5750.016.4086952
CTTACCC7450.016.1409423
GCCGTCT5900.015.99152636
TATGCCG5800.015.94827633
TTTAGGA6500.015.6538462
CGTATGC6150.015.64227631
Produced by FastQC (version 0.11.5)