FastQCFastQC Report
Thu 28 Apr 2016
ERR1041804.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041804.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3930684
Sequences flagged as poor quality0
Sequence length43
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA46650.026.5702061
CGCTATA3400.019.0441172
GTATCAA65800.018.8373872
CGAACTA3400.017.95588329
TTAACGC1301.3960744E-817.07692335
TATACTG3700.016.55
TATACAC13600.015.77941237
TCTATAC2600.015.6538463
TATACAG3200.015.6093765
TTAGCGA1557.225026E-915.516129527
TATTAGA7500.015.2933342
CTTATAC32100.014.98442537
TATGCCG5600.014.86607133
GTCTATA2400.014.6458341
CTAATAC8500.014.5823543
TTAGACA3050.014.5573764
ATACCGT1406.0050115E-714.5357146
GTATTAG9600.014.4531261
TAATACT8100.014.3888894
TCGCTAT4900.014.346941
Produced by FastQC (version 0.11.5)